Protein Analysis Sites

Science Biology Bioinformatics Online Services Protein Analysis
Science Biology Bioinformatics Online Services Protein Analysis sites
Science Biology Bioinformatics Online Services Protein Analysis
Science Biology Bioinformatics Online Services Protein Analysis sites
3D-PSSM Fold Recognition
Combines sequence and structural information for predicting the structure and/or function of your protein sequence , and can detect remote homologies beyond PSI-Blast.
Identifies functionally important regions on the surface of a protein or domain , of known three-dimensional (3D) structure using the phylogenetic relations between close sequence homologues.
Computational tool for sequence based prediction of intrinsic protein disorder and unstructured regions within a protein.
ELM - Functional Sites in Proteins
Predicts functional sites (linear motifs) in proteins , such as post-translational modification sites , ligand motifs , and targeting signals. Context-based rules and logical filters are applied to improve predictions.
Resource for the prediction of antigenicity combined with functional analysis of the target protein.
ESyPred3D is an automated homology modeling program getting benefit of the increased alignment performances of a new alignment strategy using neural networks. The final three dimensional structure is built using the modeling package MODELLER.
A database built from Pfam , PRINTS and PROSITE.
Isoelectric Point Estimator
Calculator with graphical user interface written in Qt library.
Open source Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment.
Secondary protein structure prediction from amino acid sequence; based on a consensus from several methods including DSC , PHD , NNSSP , PREDATOR , ZPRED , and MULPRED.
Melanie II 2-D Analysis Software
Powerful , state-of-the-art , 2-D analysis software package with user-friendly interface from the Swiss Institute of Bioinformatics.
A database of annotated comparative protein structure models. The database includes fold assignments and alignments as well as information about putative ligand binding sites , SNP annotation , and protein-protein interactions.
Molecular Biology Tools Online
Includes WebOligoMelt (Annealing temperature of oligonucleotides) , Virtual Ribosome (translate nucleotide sequences into peptides) , and SeqScanGraph (graph melting temperature along nucleotide chain).
Service for detecting the multiple structural alignments of proteins. Uses the common geometrical cores between the input molecules. Does not require that all the input molecules participate in the alignment.
Munich Information Center for Protein Sequences (MIPS)
Bioinformatics research group offering organism specific information (Yeast , Cress) as well as search tools for public databases.



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